Update:
I ended up uninstalling lspdfr and gtav then reinstalling and that seemed to clear up the issue. All of my mods were saved which I was very happy about. The only thing I lost were my EUP uniforms which was fine. But it also made sense because I had done a lot of uniform editing and file modification so there must have been some sort of corrupt file in there.
After reinstalling EUP uniforms and updating some plugins, everything was back up and running.